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1. Tran A, Wang A, Mickaill J, Strbenac D, Larance M, Vernon ST, Grieve SM, Figtree GA, Patrick E, Yang YH
Andy Tran, Andy Wang, Jamie Mickaill, Dario Strbenac, Mark Larance, Stephen T. Vernon, Stuart M. Grieve, Gemma A. Figtree, Ellis Patrick and Jean Yee Hwa Yang: Construction and optimization of multi-platform precision pathways for precision medicine, Scientific reports, 14 (2024), Article 4248 (11 pages).

2. Fu X, Lin Y, Lin DM, Mechtersheimer D, Wang C, Ameen F, Ghazanfar S, Patrick E, Yang YH
Xiaohang Fu, Yingxin Lin, David M. Lin, Daniel Mechtersheimer, Chuhan Wang, Farhan Ameen, Shila Ghazanfar, Ellis Patrick, Jinman Kim & Jean Y. H. Yang: BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data, Nature Communications, 15 (2024), Article 509 (17 pages).

3. Willie E, Yang P, Patrick E
Elijah Willie, Pengyi Yang, Ellis Patrick: The impact of similarity metrics on cell-type clustering in highly multiplexed in situ imaging cytometry data, Bioinformatics Advances, 3 (2023), no. 1, Article vbad141 (12 pages).

4. Patrick E, Canete NP, Iyengar SS, Harman AN, Sutherland GT, Yang P
Ellis Patrick, Nicolas P Canete, Sourish S Iyengar, Andrew N Harman, Greg T Sutherland, Pengyi Yang: Spatial analysis for highly multiplexed imaging data to identify tissue microenvironments, Cytometry Part A, 103 (2023), no. 7, 593–599.

5. Mao Y, Gide TN, Adegoke NA, Quek C, Maher N, Potter A, Patrick E, Saw RM, Thompson JF, Spillane AJ, Shannon KF, Carlino MS, Lo SN, Menzies AM, da Silva IP, Long GV, Scolyer RA, Wilmott JS
Yizhe Mao, Tuba N Gide, Nurudeen A Adegoke, Camelia Quek, Nigel Maher, Alison Potter, Ellis Patrick, Robyn M Saw, John F Thompson, Andrew J Spillane, Kerwin F Shannon, Matteo S Carlino, Serigne N Lo, Alexander M Menzies, Inês Pires da Silva, Georgina V Long, Richard A Scolyer and James S Wilmott: Cross‑platform comparison of immune signatures in immunotherapy‑treated patients with advanced melanoma using a rank‑based scoring approach, Journal of Translational Medicine, 21 (2023), 257 (16 pages).

6. Fu X, Patrick E, Yang YH, Feng DD, Kim J
Xiaohang Fu, Ellis Patrick, Jean Y H Yang, David Dagan Feng, Jinman Kim: Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables, Computers in Biology and Medicine, (2023), N/A.

7. Cao Y, Lin Y, Patrick E, Yang P, Yang YH
Yue Cao, Yingxin Lin, Ellis Patrick, Pengyi Yang and Jean Yee Hwa Yang: scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction, Bioinformatics, 38 (Open Access) (2022), no. 20, 4745–4753.

8. Wang KYX, Pupo GM, Tembe V, Patrick E, Strbenac D, Schramm SJ, Thompson JF, Scolyer RA, Muller S, Tarr G, Mann GJ, Yang YH
Kevin Y X Wang, Gulietta M Pupo, Varsha Tembe, Ellis Patrick, Dario Strbenac, Sarah-Jane Schramm, John F Thompson, Richard A Scolyer, Samuel Muller, Garth Tarr, Graham J Mann and Jean Y H Yang: Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine, npj Digital Medicine, 5 (open Access) (2022), no. 1, Article 85.

9. McCorkindale AN, Patrick E, Duce JA, Guennewig B, Sutherland GT
Andrew N McCorkindale, Ellis Patrick, James A Duce, Boris Guennewig and Greg T Sutherland: The Key Factors Predicting Dementia in Individuals With Alzheimer’s Disease-Type Pathology, Frontiers in Aging Neuroscience, 14 (2022), no. Open Access, Article 831967 (8 pages).

10. Canete NP, Iyengar SS, Ormerod JT, Baharlou H, Harman AN, Patrick E
Nicolas P Canete, Sourish S Iyengar, John T Ormerod , Heeva Baharlou, Andrew N Harman and Ellis Patrick: spicyR: spatial analysis of in situ  cytometry data in R, Bioinformatics, 38 (2022), no. 11, 3099–3105.

11. Chan A, Jiang W, Blyth E, Yang YH, Patrick E
Adam Chan, Wei Jiang, Emily Blyth, Jean Yang and Ellis Patrick: treekoR: identifying cellular-to-phenotype associations by elucidating hierarchical relationships in high-dimensional cytometry data, Genome Biology, 22 (Open Access) (2021), no. 1, Article no. 324 (14 pages).

12. Robertson H, Li J, Kim HJ, Rhodes JW, Harman AN, Patrick E, Rogers NM
Harry Robertson, Jennifer Li, Hani Jieun Kim, Jake W Rhodes, Andrew N Harman, Ellis Patrick and Natasha M Rogers: Transcriptomic Analysis Identifies A Tolerogenic Dendritic Cell Signature, Frontiers in Immunology, 12 (2021), 733231 (14 pages).

13. Bertram KM, Truong NR, Smith JE, Kim M, Sandgren KJ, Feng KL, Herbert JJ, Rana M, Danastas K, Miranda-Saksena M, Rhodes JW, Patrick E, Cohen RC, Lim JJK, Merten SL, Harman AN, Cunningham AL
Bertram, Kirstie M.; Truong, Naomi R.; Smith, Jacinta B.; Kim, Min; Sandgren, Kerrie J.; Feng, Konrad L.; Herbert, Jason J.; Rana, Hafsa; Danastas, Kevin; Miranda-Saksena, Monica; Rhodes, Jake W.; Patrick, Ellis; Cohen, Ralph C.; Lim, Jake; Merten, Steven L.; Harman, Andrew N.; Cunningham, Anthony L.: Herpes Simplex Virus type 1 infects Langerhans cells and the novel epidermal dendritic cell, Epi-cDC2s, via different entry pathways, PLoS Pathogens, 17 (2021), e1009536.

14. Baharlou H, Canete NP, Bertram KM, Sandgren KJ, Cunningham1 AL, Harman AN, Patrick E
Heeva Baharlou, Nicolas P Canete, Kirstie M Bertram, Kerrie J Sandgren, Anthony L Cunningham1,2, Andrew N Harman, and Ellis Patrick: AFid: a tool for automated identification and exclusion of autofluorescent objects from microscopy images, Bioinformatics, 37 (2021), no. 4, 559–567.

15. Rhodes JW, Botting RA, Bertram KM, Vine EE, Rana H, Baharlou H, Vegh P, O'Neil TR, Ashhurst AS, Fletcher J, Parnell GP, Graham JD, Nasr N, Lim JJK, Barnouti L, Haertsch P, Gosselink MP, Re AD, Reza F, Ctercteko G, Jenkins GJ, Brooks AJ, Patrick E, Byrne SN, Hunter E, Haniffa MA, Cunningham AL, Harman AN
Jake W Rhodes, Rachel A Botting, Kirstie M Bertram, Erica E Vine, Hafsa Rana, Heeva Baharlou, Peter Vegh, Thomas R O'Neil, Anneliese S Ashhurst, James Fletcher, Grant P Parnell, J Dinny Graham, Najla Nasr, Jake J K Lim, Laith Barnouti, Peter Haertsch, Martijn P Gosselink, Angelina Di Re, Faizur Reza, Grahame Ctercteko, Gregory J Jenkins, Andrew J Brooks, Ellis Patrick, Scott N Byrne, Eric Hunter, Muzlifah A Haniffa, Anthony L Cunningham and Andrew N Harman: Human anogenital monocyte-derived dendritic cells and langerin+cDC2 are major HIV target cells, Nature Communications, 12 (Open Access) (2021), no. 1, Article No. 2147.

16. Patrick E, Olah M, Taga M, Klein HU, Xu J, White CC, Felsky D, Agrawal S, Gaiteri C, Chibnik LB, Mostafavi S, Schneider JA, Bennett DA, Bradshaw EM, Jager PLD
Ellis Patrick, Marta Olah, Mariko Taga, Hans-Ulrich Klein, Jishu Xu, Charles C White, Daniel Felsky, Sonal Agrawal, Chris Gaiteri, Lori B Chibnik, Sara Mostafavi, Julie A Schneider, David A Bennett, Elizabeth M Bradshaw and Philip L De Jager: A cortical immune network map identifies distinct microglial transcriptional programs associated with β-amyloid and Tau pathologies, Translational Psychiatry, 11 (2021), no. 1, Article Number 50.

17. Thejer BM, Adhikary PP, Kaur A, Teakel SL, Oosterum AV, Seth I, Pajic M, Hannan KM, Pavy M, Poh P, Jazayeri JA, Zaw T, Pascovici D, Ludescher M, Pawlak M, Cassano JC, Turnbull L, Jazayeri M, James AC, Coorey CP, Roberts TL, Kinder SJ, Hannan RD, Patrick E, Molloy MP, New EJ, Fehm TN, Neubauer H, Goldys EM, Weston LA, Cahill MA
Bashar M Thejer, Partho P Adhikary, Amandeep Kaur, Sarah L Teakel, Ashleigh Van Oosterum, Ishith Seth, Marina Pajic, Katherine M Hannan, Megan Pavy, Perlita Poh, Jalal A Jazayeri, Thiri Zaw, Dana Pascovici, Marina Ludescher, Michael Pawlak, Juan C Cassano, Lynne Turnbull, Mitra Jazayeri, Alexander C James, Craig P Coorey, Tara L Roberts, Simon J Kinder, Ross D Hannan, Ellis Patrick, Mark P Molloy, Elizabeth J New, Tanja N Fehm, Hans Neubauer, Ewa M Goldys, Leslie A Weston, Michael A Cahill: PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth, BMC molecular and cell biology, 21 (2020), 1–24.

18. Ghazanfar S, Lin Y, Su X, Lin DM, Patrick E, Han ZG, Marioni JC, Yang YH
Shila Ghazanfar, Yingxin Lin, Xianbin Su, David M Lin, Ellis Patrick, Ze Guang Han, John C Marioni and Jean Yee Hwa Yang: Investigating higher-order interactions in single-cell data with scHOT, Nature Methods, 17 (2020), 799–806.

19. Kim PS, Osteil P, Humphrey SJ, Cinghu S, Oldfield AJ, Patrick E, Wilkie EE, Peng G, Suo S, Jothi R, Tam PPL, Yang P
Hani Jieun Kim, Pierre Osteil, Sean J Humphrey, Senthilkumar Cinghu, Andrew J Oldfield, Ellis Patrick, Emilie E Wilkie, Guangdun Peng, Shengbao Suo, Raja Jothi, Patrick P L Tam, Pengyi Yang: Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning, Nucleic acids research, 48 (2020), no. 4, 1828–1842.

20. Hameed AM, Lu DB, Patrick E, Xu B, Hu M, Chew YV, Keung K, P'ng CH, Gaspi R, Zhang C, Robertson P, Alexander S, Thomas G, Laurence J, Roo RD, Wong G, Miraziz R, O'Grady G, Yuen L, Hawthorne WJ, Rogers NM, Pleass HC
Ahmer M. Hameed, David B. Lu, Ellis Patrick, Bo Xu, Min Hu, Yi Vee Chew, Karen Keung, Chow H. P’ng, Renan Gaspi, Chris Zhang, Paul Robertson, Stephen Alexander, Gordon Thomas, Jerome Laurence, Ronald De Roo, Germaine Wong, Ray Miraziz, Greg O’Grady, Lawrence Yuen, Wayne J. Hawthorne, Natasha M. Rogers, Henry C. Pleass: Brief normothermic machine perfusion rejuvenates discarded human kidneys, Transplant Direct, 5 (2019), e502.

21. Baharlou H, Canete NP, Cunningham AL, Harman AN, Patrick E
Heeva Baharlou, Nicolas P Canete, Anthony L Cunningham, Andrew N Harman and Ellis Patrick: Mass Cytometry Imaging for the Study of Human Diseases—Applications and Data Analysis Strategies, Frontiers in Immunology, 10 (2019), Article number 2657, 14 November 2019.

22. Patsopoulos NA, Baranzini SE, Santaniello A, Shoostari P, Cotsapas C, Wong G, Beecham AH, James T, Replogle J, Vlachos IS, Cabe CM, Pers TH, Brandes A, White C, Keenan B, Cimpean M, Winn P, Panteliadis IP, Robbins A, Andlauer TFM, Zarzycki O, Dubois B, Goris A, Søndergaard HB, Sellebjerg F, Sorensen PS, Ullum H, Thørner LW, Saarela J, Cournu-Rebeix I, Damotte V, Fontaine B, Guillot-Noel L, Lathrop M, Vukusic S, Berthele A, Pongratz V, Buck D, Gasperi C, Graetz C, Grummel V, Hemmer B, Hoshi M, Knier B, Korn T, Lill CM, Luessi F, Mühlau M, Zipp F, Dardiotis E, Agliardi C, Amoroso A, Barizzone N, Benedetti MD, Bernardinelli L, Cavalla P, Clarelli F, Comi G, Cusi D, Esposito F, Ferrè L, Galimberti D, Guaschino C, Leone MA, Martinelli V, Moiola L, Salvetti M, Sorosina M, Vecchio D, Zauli A, Santoro S, Mancini N, Zuccalà M, Mescheriakova J, Duijn CV, Bos SD, Celius EG, Spurkland A, Comabella M, Montalban X, Alfredsson L, Bomfim IL, Gomez-Cabrero D, Hillert J, Jagodic M, Lindén M, Piehl F, Jelčić I, Martin R, Sospedra M, Baker A, Ban M, Hawkins C, Hysi P, Kalra S, Karpe F, Khadake J, Lachance G, Molyneux P, Neville M, Thorpe J, Bradshaw E, Caillier SJ, Calabresi P, Cree BAC, Cross A, Davis M, Bakker PWID, Delgado S, Dembele M, Edwards K, Fitzgerald K, Frohlich IY, Gourraud PA, Haines JL, Hakonarson H, Kimbrough D, Isobe N, Konidari I, Lathi E, Lee MH, Li T, An D, Zimmer A, Madireddy L, Manrique CP, Mitrovic M, Olah M, Patrick E, Pericak-Vance MA, Piccio L, Schaefer C, Weiner H, Lage K, Compston A, Hafler D, Harbo HF, Hauser SL, Stewart G, D’Alfonso S, Hadjigeorgiou G, Taylor B, Barcellos LF, Booth DR, Hintzen R, Kockum I, Martinelli-Boneschi F, Cauley JLM, Oksenberg JR, Oturai A
Nikolaos A Patsopoulos, Sergio E Baranzini, Adam Santaniello, Parisa Shoostari, Chris Cotsapas, Garrett Wong, Ashley H Beecham, Tojo James, Joseph Replogle, Ioannis S Vlachos, Cristin McCabe, Tune H Pers, Aaron Brandes, Charles White, Brendan Keenan, Maria Cimpean, Phoebe Winn, I-P Panteliadis, Allison Robbins, Till FM Andlauer, Onigiusz Zarzycki, Bénédicte Dubois, An Goris, Helle Bach Søndergaard, Finn Sellebjerg, Per Soelberg Sorensen, Henrik Ullum, Lise Wegner Thørner, Janna Saarela, Isabelle Cournu-Rebeix, Vincent Damotte, Bertrand Fontaine, Lena Guillot-Noel, Mark Lathrop, Sandra Vukusic, Achim Berthele, Viola Pongratz, Dorothea Buck, Christiane Gasperi, Christiane Graetz, Verena Grummel, Bernhard Hemmer, Muni Hoshi, Benjamin Knier, Thomas Korn, Christina M Lill, Felix Luessi, Mark Mühlau, Frauke Zipp, Efthimios Dardiotis, Cristina Agliardi, Antonio Amoroso, Nadia Barizzone, Maria D Benedetti, Luisa Bernardinelli, Paola Cavalla, Ferdinando Clarelli, Giancarlo Comi, Daniele Cusi, Federica Esposito, Laura Ferrè, Daniela Galimberti, Clara Guaschino, Maurizio A Leone, Vittorio Martinelli, Lucia Moiola, Marco Salvetti, Melissa Sorosina, Domizia Vecchio, Andrea Zauli, Silvia Santoro, Nicasio Mancini, Miriam Zuccalà, Julia Mescheriakova, Cornelia Van Duijn, Steffan D Bos, Elisabeth G Celius, Anne Spurkland, Manuel Comabella, Xavier Montalban, Lars Alfredsson, Izaura L Bomfim, David Gomez-Cabrero, Jan Hillert, Maja Jagodic, Magdalena Lindén, Fredrik Piehl, Ilijas Jelčić, Roland Martin, Mirela Sospedra, Amie Baker, Maria Ban, Clive Hawkins, Pirro Hysi, Seema Kalra, Fredrik Karpe, Jyoti Khadake, Genevieve Lachance, Paul Molyneux, Matthew Neville, John Thorpe, Elizabeth Bradshaw, Stacy J Caillier, Peter Calabresi, Bruce AC Cree, Anne Cross, Mary Davis, Paul WI De Bakker, Silvia Delgado, Marieme Dembele, Keith Edwards, Kate Fitzgerald, Irene Y Frohlich, P-A Gourraud, Jonathan L Haines, Hakon Hakonarson, Dorlan Kimbrough, Noriko Isobe, Ioanna Konidari, Ellen Lathi, Michelle H Lee, Taibo Li, David An, Andrew Zimmer, Lohith Madireddy, Clara P Manrique, Mitja Mitrovic, Marta Olah, Ellis Patrick, Margaret A Pericak-Vance, Laura Piccio, Cathy Schaefer, Howard Weiner, Kasper Lage, Alastair Compston, David Hafler, HF Harbo, SL Hauser, Graeme Stewart, Sandra D’Alfonso, Georgios Hadjigeorgiou, Bruce Taylor, LF Barcellos, David Booth, Rogier Hintzen, Ingrid Kockum, Filippo Martinelli-Boneschi, JL McCauley, JR Oksenberg, Annette Oturai: Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility, Science, 365 (2019), no. 6460,

23. Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang YH, Yang P
Yingxin Lin, Shila Ghazanfar, Dario Strbenac, Andy Wang, Ellis Patrick, David M Lin, Terence Speed, Jean YH Yang, Pengyi Yang: Evaluating stably expressed genes in single cells, GigaScience, 8 (2019), no. 9, giz106.

24. Ng B, Casazza W, Patrick E, Tasaki S, Novakovsky G, Felsky D, Ma Y, Bennett DA, Gaiteri C, Jager PLD, Mostafavi S
Bernard Ng, William Casazza, Ellis Patrick, Shinya Tasaki, Gherman Novakovsky, Daniel Felsky, Yiyi Ma, David A Bennett, Chris Gaiteri, Philip L De Jager, Sara Mostafavi: Using Transcriptomic Hidden Variables to Infer Context-Specific Genotype Effects in the Brain, The American Journal of Human Genetics, 105 (2019), no. 3, 562–572.

25. Kozlowska K, Chung J, Cruickshank B, Lean LM, Scher S, Dale RC, Mohammad SS, Singh-Grewal D, Prabhuswamy MY, Patrick E
Kasia Kozlowska, Jason Chung, Bronya Cruickshank, Loyola McLean, Stephen Scher, Russell C Dale, Shekeeb S Mohammad, Davinder Singh-Grewal, Mukesh Yajaman Prabhuswamy, Ellis Patrick: Blood CRP levels are elevated in children and adolescents with functional neurological symptom disorder, European Child and Adolescent Psychiatry, 28 (2019), no. 4, 491–504.

26. Vera EJ, Chew YV, Nicholson L, Burns H, Anderson P, Chen HT, Williams L, Keung K, Zanjani NT, Dervish S, Patrick E, Wang XM, Yi S, Hawthorne W, Alexander S, O’Connell PJ, Hu M
Elvira Jimenez Vera, Yi Vee Chew, Leigh Nicholson, Heather Burns, Patricia Anderson, Hsiao-Ting Chen, Lindy Williams, Karen Keung, Negar Talaei Zanjani, Suat Dervish, Ellis Patrick, Xin Maggie Wang, Shounan Yi, Wayne Hawthorne, Stephen Alexander, Philip J O’Connell, Min Hu: Standardisation of flow cytometry for whole blood immunophenotyping of islet transplant and transplant clinical trial recipients, PLOS One, 14 (2019), no. 5, e0217163–1 – e0217163–28.

27. Ghazanfar S, Strbenac D, Ormerod JT, Yang YH, Patrick E
Shila Ghazanfar, Dario Strbenac, John T Ormerod, Jean Y H Yang and Ellis Patrick: DCARS: Differential correlation across ranked samples, Bioinformatics, 35 (2019), no. 5, 823–829.

28. Ghazanfar S, Strbenac D, Ormerod JT, Yang YH, Patrick E
Shila Ghazanfar, Dario Strbenac, John T Ormerod, Jean Y H Yang, Ellis Patrick: DCARS: differential correlation across ranked samples, Bioinformatics, 1 (2018), bty698.

29. Bove RM, Patrick E, Aubin CMC, Srivastava G, Schneider JA, Bennett DA, Jager PLD, Chibnik LB
Riley M Bove, Ellis Patrick, Cristin McCabe Aubin, Gyan Srivastava, Julie A Schneider, David A Bennett , Philip L De Jager, Lori B Chibnik: Reproductive period and epigenetic modifications of the oxidative phosphorylation pathway in the human prefrontal cortex, PLoS ONE, 13 (2018), no. 7,

30. Felsky D, Patrick E, Schneider JA, Mostafavi S, Gaiteri C, Patsopoulos N, Bennett DA, Jager PLD
Daniel Felsky, Ellis Patrick, Julie A Schneider, Sara Mostafavi, Chris Gaiteri, Nikolaos Patsopoulos, David A Bennett and Philip L De Jager: Polygenic analysis of inflammatory disease variants and effects on microglia in the aging brain, Molecular Neurodegeneration, 13 (2018), no. 1, Article 38.

31. Olah M, Patrick E, Villani AC, Xu J, White CC, Ryan KJ, Piehowski P, Kapasi A, Nejad P, Cimpean M, Connor S, Yung CJ, Frangieh M, Henry AM, Elyaman W, Petyuk V, Schneider JA, Bennett DA, De Jager PM, Bradshaw EM
Marta Olah, Ellis Patrick, Alexandra-Chloe Villani, Jishu Xu, Charles C White, Katie J Ryan, Paul Piehowski, Alifiya Kapasi, Parham Nejad, Maria Cimpean, Sarah Connor, Christina J Yung, Michael Frangieh, Allison McHenry, Wassim Elyaman, Vlad Petyuk, Julie A Schneider, David A Bennett, Philip L De Jager & Elizabeth M Bradshaw: A transcriptomic atlas of aged human microglia, Nature Communications, 9 (2018), no. 1, 539 (8 pages).

32. Patrick E, Rajagopal S, Wong HKA, McCabe C, Xu J, Tang A, Imboywa SH, Schneider JA, Pochet N, Krichevsky AM, Chibnik LB, Bennett DA, De Jager PL
Ellis Patrick, Sathyapriya Rajagopal, Hon-Kit Andus Wong, Cristin McCabe, Jishu Xu, Anna Tang, Selina H. Imboywa, Julie A. Schneider, Nathalie Pochet, Anna M. Krichevsky, Lori B. Chibnik, David A. Bennett and Philip L. De Jager: Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease, Molecular Neurodegeneration, 12 (2017), no. 1, 51.

33. Wong G, Howell M, Patrick E, Yang YH
G. Wong, M. Howell, E. Patrick and J Yang: Taking Kidneys for Granted? Time to Reflect on the Choices We Make, Transplantation, 101 (2017), no. 12, 2812–2813.

34. Ng B, White CC, Klein HU, Sieberts SK, McCabe C, Patrick E, Xu J, Yu L, Gaiteri C, Bennett DA, Mostafavi S, De Jager PL
Bernard Ng, Charles C White, Hans-Ulrich Klein, Solveig K Sieberts, Cristin McCabe, Ellis Patrick, Jishu Xu, Lei Yu, Chris Gaiteri, David A Bennett, Sara Mostafavi and Philip L De Jager: An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome, Nature Neuroscience, 20 (2017), no. 10, 1418–1426.

35. Patrick E, Schramm S-J, Ormerod JT, Scolyer RA, Mann GJ, Muller S, Yang YH
E Patrick, S-J Schramm, JT Ormerod, RA Scolyer, GJ Mann, S Mueller, YH Yang: A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types, Oncotarget, 8 (2017), no. 2, 2807–2815.

36. Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J Humphrey, Shila Ghazanfar, David E James, Raja Jothi, Jean Yee Hwa Yang: KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis, Proteomics, 16 (2016), no. 13, 1868–1871.

37. Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J. Humphrey, Shila Ghazanfar, David E. James, Raja Jothi, Jean Yee Hwa Yang: KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis, Proteomics, 16 (2016), 1868 – 1871.

38. Patrick E, Buckley MJ, Muller S, Lin DM, Yang YH
E Patrick, M Buckley, S Müller, DM Lin, YH Yang: Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from small sample miRNA-Seq and mRNA-Seq data, Bioinformatics, 31 (2015), no. 17, 2822–2828.

39. Sparks RS, Patrick E
R Sparks, E Patrick: Detection of multiple outbreaks using spatio-temporal EWMA-ordered statistics, Communications in Statistics-Simulation and Computation, 43 (2014), no. 10, 2678–2701.

40. Parnell GP, O'Connor KS, Patrick E, Ahlenstiel G, Suppiah V, van der Poorten D, Read SA, Leung R, Douglas MW, Yang YH, Stewart GJ, Liddle C, George J, Booth DR
O'Connor KS, Parnell G, Patrick E, Ahlenstiel G, Suppiah V, van der Poorten D, Read SA, Leung R, Douglas MW, Yang JY, Stewart GJ, Liddle C, George J and Booth DR: Hepatic metallothionein expression in chronic hepatitis C virus infection is IFNL3 genotype-dependent, Genes and Immunity, 15 (2014), no. 2, 88–94.

41. Yang P, Patrick E, Tan SX, Fazakerley DJ, Burchfield JG, Gribben C, Prior MJ, James DE, Yang YH
Pengyi Yang, Ellis Patrick, Shi-Xiong Tan, Daniel J Fazakerley, James Burchfield, Christopher Gribben, Matthew J Prior, David E James and Yee Hwa Yang: Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway, Bioinformatics, 30 (2014), no. 6, 808–814.

42. Tonks KT, Ng Y, Miller S, Coster AC, Samocha-Bonet D, Iseli TJ, Xu A, Patrick E, Yang YH, Junutula JR, Modrusan Z, Kolumam G, Stöckli J, Chisholm DJ, James DE, Greenfield JR
KT Tonks, Y Ng, S Miller, AC Coster, D Samocha-Bonet, TJ Iseli, A Xu, E Patrick, JY Yang, JR Junutula, Z Modrusan, G Kolumam, J Stöckli, DJ Chisholm, DE James, JR Greenfield: Impaired Akt phosphorylation in insulin-resistant human muscle is accompanied by selective and heterogeneous downstream defects., Diabetologia, 56 (2013), no. 4, 875–885.

43. Patrick E, Buckley MJ, Lin DM, Yang YH
Ellis Patrick, Michael Buckley, David Ming Lin, Yee Hwa Yang: Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information, BMC Genomics, 14 (2013), no. Supplement 1, 1–9.

44. Patrick E, Buckley MJ, Yang YH
Ellis Patrick, Michael Buckley and Yee Hwa Yang: Estimation of data-specific constitutive exons with RNA-Seq data, BMC Bioinformatics, 14 (2013), no. 31, 1–10.

Number of matches: 44